Mathématiques et Informatique Appliquées
du Génome à l'Environnement

 

 

AMN

Intitulé du projet
Artifical Metabolic Networks
Nature du partenaire financeur
ANR
État du contrat
Accepté
Année de soumission
2021
Programme / appel / défi concerné + année
PRC AAPG2021
Défi/axe ANR
Axis 8.5 (CE45)
Equipe(s)
BioSys
Coordinateur·trice (nom et prénom) MaIAGE et/ou INRAE
LIEBERMEISTER Wolfram
Nom du responsable d'équipe (nom et prénom)
FROMION Vincent
Nom(s) du(des) participant(s) - MaIAGE
Wolfram Liebermeister
Nom(s) du(des) partenaire(s) - Hors MaIAGE
Micalis, AgroParisTech Jean-Loup Faulon
Année de démarrage - Année de fin de projet
2022-2025
Date de début de contrat
Date de fin du contrat
Résumé
While the primary role of metabolism is chemical conversions, can it also serve as an information processing device? To answer this question, we propose to encode various microbial metabolic models into Artificial Metabolic Networks (AMNs), which can be trained on experimental data or model simulations. Unlike “black box” models, our AMNs will reflect faithfully the structure and dynamics of metabolic networks. Our AMNs will be benchmarked on classical machine learning problems to assess what level of computational sophistication metabolism is able to handle. In the context of biotechnology, our AMNs will be applied to (i) design experiments to optimize bioprocesses for nutrient compositions that maximize the production of added value chemicals in engineered bacterial strains and to (ii) engineer the metabolism of an E. coli reporter strain to classify clinical samples containing metabolic biomarkers of infectious diseases.