Mathématiques et Informatique Appliquées
du Génome à l'Environnement

 

 

  1. Accueil

Gendrault Annie

Coordonnées

  Email : annie.gendrault@jouy.inra.fr
Adresse : INRA - Unité MaIAGE
                 Bâtiment 233
                 Domaine de Vilvert
                 78352 JOUY-EN-JOSAS CEDEX
Tél : +33 (0)1 34 65 28 98
Fax : +33 (0)1 34 65 29 01
Secrétariat : +33 (0)1 34 65 28 86		 Annie Gendrault

Database Administrator

  • Micado : Microbial Advanced Database Organization.Micado
  • Mosaic : an online database dedicated to the comparative genomics of bacterial strains at the intra-species level.Mosaic
  • Funybase : the Fungal Phylogenomic database.Funybase
  • Prose : Protein Sequences database. Prose

Projects

Some of the projects I have been involved in

  • SURFING: ANR Révéler le potentiel anti-inflammatoire des produits laitiers fermentés (2011-2013). [Surfing]
  • GEMO: ANR Genomics & Biotechnologie project (2010-2013)
  • NANOMUBIOP : EU funded research project FP7 (2008-2011)[Nanomubiop]
  • MIGADI : ANR PFTV project (2008-2010) [Migadi]
  • COCOGEN : ANR Blanc project (2008-2010) [Cocogen]
  • SPECIA-FONGE : ANR Blanc project (2006-2009)
  • MICROBIOGENOMICS : ANR Masse de données (2006-2008)[Microbiogenomics]

Publications

2012

  • Aguileta, G., Lengelle, J., Chiapello, H., Giraud, T., Viaud, M., Fournier, E., Rodolphe, F., Marthey, S., Ducasse, A., Gendrault-Jacquemard, A., Poulain, J., Wincker, P. and Gout, L. (2012)
    Genes under positive selection in a model plant pathogenic fungus, botrytis. Infection Genetics and Evolution. 12(05) 987-996. DOI:10.1016/j.meegid.2012.02.012
  • Grépinet, O., Boumart, Z., Virlogeux-Payant, I., Loux, V., Chiapello, H., Gendrault, A., Gibrat, J.F., Chemaly, M. and Velge, P. (2012)
    Genome Sequence of the Persistent Salmonella enterica subsp. enterica Serotype Senftenberg Strain SS209. J. Bacteriol. 2012, 194(9):2385. DOI: 10.1128/JB.00255-12.
  • Grépinet, O., Rossignol, A., Loux, V., Chiapello, H., Gendrault, A., Gibrat, J.F., Velge, P. and Virlogeux-Payant, I. (2012)
    Genome Sequence of the Invasive Salmonella enterica subsp. enterica Serotype Enteritidis Strain LA5. J. Bacteriol. 2012, 194(9):2387. DOI: 10.1128/JB.00256-12.

2011

  • Lacroix, T., Loux, V., Gibrat, J.-F., Gendrault, A. and Chiapello, H. (2011).
    CompaGB: An open framework for genome browsers comparison. BMC Research Notes. 4 no.1:133.

2009-2010

  • Fournier, E., Tharreau, D., Kroj, T., Chiapello, C., Aguileta, G., Rodolphe, F., Gendrault, A. and Lebrun, M.-H. (2010).
    Gemo : an innovative project on evolutionary genomics of magnaporthe oryzae. In rencontres de Phytopathologie de la Société Française de Phytopathologie., 1 p., Aussois, France. Poster.
  • Aguileta G, Lengelle J, Marthey S, Chiapello H, Rodolphe F, Gendrault A, Yockteng R, Vercken E, Devier B, Wincker P, Dossat C, Cruaud C, Couloux A and Giraud T. (2010)
    Finding Candidate Genes under Positive Selection in Non-Model Species:
    Examples of Genes involved in Host Specialization in Pathogens.     Molecular Ecology. 19:292-306.
    [PubMed]

2005-2008

  • Chiapello H, Gendrault A, Caron C, Blum J, Petit MA, El Karoui M. (2008).
    MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level.
    BMC Bioinformatics. 9:498.[Biomedcentral]
  • Marthey S, Aguileta G, Rodolphe F, Gendrault A, Giraud T, Fournier E, Lopez-Villavicencio M, Gautier A, Lebrun MH and Chiapello H.(2008). « Funybase: a Fungal phylogenomic database.» BMC Bioinformatics. 9 456.[Biomedcentral]
  • Aguileta G., Marthey S., Chiapello H., Lebrun, M. -H., Rodolphe, F., Fournier, E., Gendrault-Jacquemard, A. and Giraud, T.(2008). « Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies.»,Systematic Biology,57:4,613 — 627 DOI: http://dx.doi.org/10.1080/10635150802306527. [PubMed]
  • Giraud T,Yockteng R, Marthey S, Chiapello H, Jonot O, Lopez-Villavicencio M, De Vienne DM, Hood ME, Refregier G, Gendrault-Jacquemard A, Wincker P, Dossat C. (2008) « Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum. » Molecular Ecology Notes. doi:10.1111/j.1471-8286.2007.01967.x [Wiley-Interscience]
  • Yockteng R, Marthey S, Chiapello H, Gendrault A, Hood ME, Rodolphe F, Devier B, Wincker P, Dossat C, Giraud T. (2007) « Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes. » BMC Genomics. Aug 10;8:272. [Biomedcentral]
  • Chiapello, H., Bourgait, I., Sourivong, F., Heuclin, G., Gendrault-Jacquemard, A., Petit, M. and El Karoui, M. (2005). « Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops. » BMC Bioinformatics. 6 171.[Biomedcentral]